PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen11g027340.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 203aa    MW: 23593.8 Da    PI: 9.7214
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen11g027340.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM843.1e-2647755128
               NAM  55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++w+fF++r++++a+g r+ r+t+ gyWkatg+   v+s++++++g+kk++vfykg+ap+g+kt+W m+eyr+
  Sopen11g027340.1   4 REQWFFFVPRQEREARGGRPCRTTNCGYWKATGSPSYVYSSNNKVIGVKKSMVFYKGKAPTGKKTKWKMNEYRA 77 
                       579*********************************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100531.7861103IPR003441NAC domain
SuperFamilySSF1019411.57E-292101IPR003441NAC domain
PfamPF023653.8E-12776IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MGDREQWFFF VPRQEREARG GRPCRTTNCG YWKATGSPSY VYSSNNKVIG VKKSMVFYKG  60
KAPTGKKTKW KMNEYRAIQE EVNSTLSIPK LRHEMSLCRI YVISGSFRAF DRRPIAPTIT  120
REPSKSIINQ GGISMENVTK MEAISSPDEN FFMEEQDYVN LNHNDQIPII NQEININSHN  180
NKRVKSNLHD ETLISGWEQF NWM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-19110168163NO APICAL MERISTEM PROTEIN
1ut4_B1e-19110168163NO APICAL MERISTEM PROTEIN
1ut7_A1e-19110168163NO APICAL MERISTEM PROTEIN
1ut7_B1e-19110168163NO APICAL MERISTEM PROTEIN
3swm_A1e-19110171166NAC domain-containing protein 19
3swm_B1e-19110171166NAC domain-containing protein 19
3swm_C1e-19110171166NAC domain-containing protein 19
3swm_D1e-19110171166NAC domain-containing protein 19
3swp_A1e-19110171166NAC domain-containing protein 19
3swp_B1e-19110171166NAC domain-containing protein 19
3swp_C1e-19110171166NAC domain-containing protein 19
3swp_D1e-19110171166NAC domain-containing protein 19
4dul_A1e-19110168163NAC domain-containing protein 19
4dul_B1e-19110168163NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015057943.11e-151PREDICTED: NAC domain-containing protein 90
SwissprotQ9FMR34e-59NAC90_ARATH; NAC domain-containing protein 90
TrEMBLK4DA191e-146K4DA19_SOLLC; Uncharacterized protein
STRINGSolyc11g068620.1.11e-146(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24942357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.15e-60NAC domain containing protein 90